Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
12,808 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · Mapping of transcription factor binding sites in mouse embry...
|
Mus musculus | — | 73 | 2 1✓ |
|
GEO · Single-cell RNA-seq of mouse cerebral cortex
|
Mus musculus | C 76 | 66 | — |
|
GEO · Multi-scale 3D genome rewiring during mouse neural developme...
|
Mus musculus | insufficient | 52 | — |
|
GEO · Single-cell RNA-Seq reveals dynamic, random monoallelic gene...
|
Mus musculus | A 95 | 48 | — |
|
GEO · ImmGen Microarray Phase 1
|
Mus musculus | insufficient | 43 | — |
|
GEO · GNF Mouse GeneAtlas V3
|
Mus musculus | — | 39 | — |
|
GEO · Histone Modifications by ChIP-seq from ENCODE/LICR
|
Mus musculus | insufficient | 35 | — |
|
GEO · An RNA-Seq transcriptome and splicing database of neurons, g...
|
Mus musculus | A 100 | 35 | — |
|
GEO · Connecting microRNA genes to the core transcriptional regula...
|
Mus musculus | — | 34 | — |
|
GEO · A draft map of cis-regulatory sequences in the mouse genome
|
Mus musculus | — | 34 | 1 |
|
GEO · Genome-wide maps of chromatin state in pluripotent and linea...
|
Mus musculus | insufficient | 33 | — |
|
GEO · The transcriptional landscape of mouse blood stem/progenitor...
|
Mus musculus | F 32 | 33 | — |
|
GEO · Tabula Muris: Transcriptomic characterization of 20 organs a...
|
Mus musculus | A 91 | 32 | — |
|
GEO · A single-cell survey of the small intestinal epithelium
|
Mus musculus | insufficient | 32 | 1 1✓ |
|
GEO · Adult mouse cortical cell taxonomy by single cell transcript...
|
Mus musculus | B 87 | 31 | 1 |
|
GEO · Simple combinations of lineage-determining transcription fac...
|
Mus musculus | insufficient | 23 | 1 1✓ |
|
GEO · Tabula Muris Senis: Bulk sequencing
|
Mus musculus | B 83 | 22 | — |
|
GEO · Shared and distinct transcriptomic cell types across neocort...
|
Mus musculus | insufficient | 21 | 1 |
|
GEO · High throughput quantitative whole transcriptome analysis of...
|
Mus musculus | D 61 | 21 | — |
|
GEO · Comprehensive single cell RNAseq analysis of the kidney reve...
|
Mus musculus | B 83 | 19 | 1 |
|
GEO · Characterization of the single-cell (ES and MEF) transcripti...
|
Mus musculus | — | 18 | — |
|
GEO · Single-cell RNA-seq reveals dynamic paracrine control of cel...
|
Mus musculus | A 90 | 18 | — |
|
GEO · Transcriptional heterogeneity and lineage commitment in myel...
|
Mus musculus | — | 18 | — |
|
GEO · Single-Cell Analysis of Sensory Experience Regulated Gene Ex...
|
Mus musculus | F 20 | 17 | — |
|
GEO · A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibi...
|
Mus musculus | insufficient | 17 | — |
|
GEO · Control of Embryonic Stem Cell State by Mediator and Cohesin...
|
Mus musculus | — | 17 | — |
|
GEO · Single-Cell Whole-Genome Bisulfite Sequencing for Analysis o...
|
Mus musculus | insufficient | 17 | — |
|
GEO · Single-cell RNA-seq analysis unveils a prevalent epithelial/...
|
Mus musculus | — | 17 | — |
|
GEO · Cooperative binding of Oct4, Sox2, and Klf4 with stage-speci...
|
Mus musculus | — | 17 | — |
|
GEO · High-temporal resolution profiling of mouse liver
|
Mus musculus | — | 16 | — |
|
GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...
|
Mus musculus | insufficient | 16 | 1 1✓ |
|
GEO · DNaseI Hypersensitivity by Digital DNaseI from ENCODE/Univer...
|
Mus musculus | insufficient | 16 | — |
|
GEO · RNA-Seq of single cells from the mouse lumbar dorsal root ga...
|
Mus musculus | B | 16 | — |
|
GEO · Distinct features in establishing H3K4me3 and H3K27me3 in pr...
|
Mus musculus | — | 16 | — |
|
GEO · Allelic reprogramming of 3D chromatin architecture during ea...
|
Mus musculus | — | 16 | — |
|
GEO · Targeted degradation of CTCF decouples local insulation of c...
|
Mus musculus | insufficient | 16 | — |
|
GEO · ImmGen ULI: Systemwide RNA-seq profiles (#1)
|
Mus musculus | — | 15 | — |
|
GEO · Genome-wide chromatin state maps of ES cells, ES-derived neu...
|
Mus musculus | — | 15 | — |
|
GEO · The dynamic transcriptional landscape of mammalian organogen...
|
Mus musculus | — | 15 | — |
|
GEO · Comprehensive single-cell mRNA profiling reveals a detailed...
|
Mus musculus | — | 15 | — |
|
GEO · Single-cell RNA-seq reveals the transcriptional landscape in...
|
Mus musculus | — | 15 | — |
|
GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...
|
Mus musculus | insufficient | 15 | 1 1✓ |
|
GEO · Long RNA-seq from ENCODE/Cold Spring Harbor Lab
|
Mus musculus | insufficient | 15 | — |
|
GEO · Tissue-specific methylomes reveal epigenetic memory in adult...
|
Mus musculus | — | 15 | — |
|
GEO · Programming and inheritance of parental DNA methylomes in ma...
|
Mus musculus | insufficient | 15 | — |
|
GEO · The landscape of accessible chromatin in mammalian pre-impla...
|
Mus musculus | — | 15 | — |
|
GEO · ImmGen ATAC-seq data
|
Mus musculus | — | 14 | — |
|
GEO · Cardiac transcription factors in HL-1 cells: gene expression...
|
Mus musculus | — | 14 | — |
|
GEO · Epigenome and transcriptome of naive pluripotent mouse embry...
|
Mus musculus | — | 14 | — |
|
GEO · Cell fate inclination within 2-cell and 4-cell mouse embryos...
|
Mus musculus | — | 14 | — |
|
GEO · Epigenomic Signatures of Neuronal Diversity in the Mammalian...
|
Mus musculus | — | 14 | — |
|
GEO · Single-cell RNA-seq of mouse hypothalamus
|
Mus musculus | — | 14 | — |
|
GEO · Using DNA methylation profiling to evaluate biological age a...
|
Mus musculus | — | 14 | — |
|
GEO · Single-cell full-length total RNA sequencing uncovers dynami...
|
Mus musculus | — | 14 | — |
|
GEO · Single cell profiling reveals sex, lineage and regional dive...
|
Mus musculus | — | 13 | — |
|
GEO · Dynamic, sex-differential STAT5 and BCL6 binding to sex-bias...
|
Mus musculus | — | 13 | — |
|
GEO · Genetic recombination is directed away from functional genet...
|
Mus musculus | — | 13 | — |
|
GEO · Master Transcription Factors and Mediator Establish Super-En...
|
Mus musculus | insufficient | 13 | — |
|
GEO · Validation of noise models for single-cell transcriptomics
|
Mus musculus | D 60 | 13 | — |
|
GEO · Transcriptome profile of a murine renal bilateral ischemia r...
|
Mus musculus | — | 13 | — |