Dataset search

A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.

Publications 1.3k Datasets 111 Experiments 4.7k

111 datasets

Accession	Organism	QC	Reuse (literature)	Studies (✓/⚑)
GSE78220 GEO · mRNA expressions in pre-treatment melanomas undergoing anti-...	Homo sapiens	A 100	142	1 1✓
GSE31477 GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...	Homo sapiens	insufficient	48	1 1✓
GSE116256 GEO · Single-cell RNA-seq reveals AML hierarchies relevant to dise...	Homo sapiens	F 19	34	2 1✓
GSE152418 GEO · Systems biological assessment of immunity to severe and mild...	Homo sapiens	A 99	34	1 1✓
GSE115821 GEO · Robust prediction of response to immune checkpoint blockade...	Homo sapiens	D 69	25	1 1✓
GSE21512 GEO · Simple combinations of lineage-determining transcription fac...	Mus musculus	insufficient	23	1 1✓
GSE107585 GEO · Comprehensive single cell RNAseq analysis of the kidney reve...	Mus musculus	B 83	19	1
PRJEB23709 BioProject	—	A 100	18	2 1✓ 1⚑
GSE35681 GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...	Mus musculus	insufficient	16	1 1✓
GSE20898 GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...	Mus musculus	insufficient	15	1 1✓
GSE41637 GEO · Evolutionary dynamics of gene and isoform regulation in mamm...	Gallus gallus; Macaca mulatta; Bos taurus; Mus musculus; Rattus norvegicus	B 88	15	1 1✓
GSE147405 GEO · Context specificity of the EMT transcriptional response	Homo sapiens	A 100	13	1 1⚑
GSE20012 GEO · Deciphering the cis-regulatory architecture of mammalian pho...	Mus musculus	insufficient	12	1 1✓
GSE21978 GEO · A global network of transcription factors, involving E2A, EB...	Mus musculus	insufficient	12	1 1✓
GSE29422 GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...	Homo sapiens	insufficient	12	1 1✓
GSE122401 GEO · Proteogenomic characterization of human early-onset gastric...	Homo sapiens	A 100	11	1
GSE80280 GEO · 3D structures of individual mammalian genomes reveal princip...	Mus musculus	insufficient	11	1 1✓
GSE37350 GEO · Altered Subcellular Localization of Transcription Factor TEA...	Mus musculus	insufficient	9	1 1✓
GSE79362 GEO · A blood RNA signature for tuberculosis disease risk: a prosp...	Homo sapiens	A 100	7	1 1✓
PRJNA204941 BioProject	—	A 100	7	2 2✓
GSE32673 GEO	—	insufficient	6	1 1✓
GSE48068 GEO	—	insufficient	6	1 1✓
GSM958729 GEO	—	B 82	6	1 1✓
GSE100007 GEO · Widespread translational remodeling during human neuronal di...	Homo sapiens	A 95	5	1 1✓
GSE123496 GEO · Human brain tissues from healthy controls and multiple scler...	Homo sapiens	A 90	5	1 1✓
SRP000941 ENA	—	insufficient	5	1 1✓
GSE115098 GEO · Kidney compartment specific eQTL studies highlight causal ge...	Homo sapiens	A 100	4	1 1✓
GSE13845 GEO · ChIP-seq Accurately Predicts Tissue-Specific Activity of Enh...	Mus musculus	insufficient	4	1 1✓
GSE59765 GEO · EGFR and MEK pathway signature RNA-Seq datasets	Homo sapiens	A 100	4	1 1✓
GSE63412 GEO	—	A 99	4	1
PRJNA257197 BioProject	—	C 74	4	1 1✓
GSE106273 GEO · Differentiation dynamics of mammary epithelial cells reveale...	Mus musculus	B 83	3	1 1✓
GSE58321 GEO	—	D 68	3	1 1✓
GSE92846 GEO · Stem cell regulatory elements remain bookmarked by selected...	Mus musculus	insufficient	3	1
ERR852097 ENA	—	B 83	2	1 1✓
ERR852099 ENA	—	B 83	2	1 1✓
GSE104840 GEO · LSD1-mediated enhancer silencing enables endocrine cell deve...	Homo sapiens	insufficient	2	1 1✓
GSE107947 GEO · Dissection of influenza infection in vivo by single-cell RNA...	Mus musculus	C 79	2	1
GSE111113 GEO · Single-Cell Transcriptomes Distinguish Stem Cell State Chang...	Mus musculus	A 100	2	1 1✓
GSE72343 GEO	—	B 81	2	1
PRJNA254017 BioProject	—	B 80	2	1 1✓
SRP041863 ENA	—	A 91	2	1 1✓
SRR1820680 ENA	—	D 67	2	1 1✓
SRR5127219 ENA	—	B 83	2	1 1✓
ERR409900 ENA	—	B 83	1	1 1✓
ERR973611 ENA	—	B 83	1	1 1✓
ERR973613 ENA	—	B 83	1	1 1✓
GSE151551 GEO	—	insufficient	1	1 1✓
GSE173343 GEO	—	B 84	1	1 1✓
GSM1020640 GEO	—	B 88	1	1 1✓
PRJDB6460 BioProject	—	A 99	1	1 1✓
PRJNA289908 BioProject	—	A 100	1	1 1✓
PRJNA321737 BioProject	—	B 87	1	1 1✓
PRJNA328865 BioProject	—	A 94	1	1 1✓
PRJNA418169 BioProject	—	D 68	1	1 1✓
PRJNA587095 BioProject	—	C 77	1	1 1✓
SRR1291267 ENA	—	B 83	1	1 1✓
SRR1291269 ENA	—	B 83	1	1 1✓
SRR1427160 ENA	—	B 83	1	1 1✓
SRR1427161 ENA	—	B 83	1	1 1✓