Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
37,402 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · mRNA expressions in pre-treatment melanomas undergoing anti-...
|
Homo sapiens | A 100 | 142 | 1 1✓ |
|
GEO · Transcriptional response to SARS-CoV-2 infection
|
Homo sapiens; Mustela putorius furo | A 95 | 124 | — |
|
GEO · [E-MTAB-513] Illumina Human Body Map 2.0 Project
|
Homo sapiens | F 33 | 75 | — |
|
GEO · Single-cell RNA-seq of mouse cerebral cortex
|
Mus musculus | C 76 | 66 | — |
|
GEO · A survey of human brain transcriptome diversity at the singl...
|
Homo sapiens | B 86 | 58 | — |
|
GEO
|
— | A 97 | 57 | — |
|
GEO · UCSD Human Reference Epigenome Mapping Project
|
Homo sapiens | insufficient | 56 | 1 1✓ |
|
GEO · Snapshot and temporal scRNA-seq of progenitor cells to disse...
|
Homo sapiens | A 100 | 52 | — |
|
GEO · Multi-scale 3D genome rewiring during mouse neural developme...
|
Mus musculus | insufficient | 52 | — |
|
GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...
|
Homo sapiens | insufficient | 48 | 1 1✓ |
|
GEO · Single-cell RNA-Seq reveals dynamic, random monoallelic gene...
|
Mus musculus | A 95 | 48 | — |
|
GEO · RNAseq study of synovial biopsies
|
Homo sapiens | B 85 | 41 | — |
|
GEO · Identification of transcription factors responsible for dysr...
|
Homo sapiens | D 63 | 40 | — |
|
BioProject
|
— | A 94 | 40 | — |
|
GEO · Gene expression profiling study by RNA-seq in colorectal can...
|
Homo sapiens | F 33 | 39 | — |
|
GEO · Genome-wide identification of differentially methylated prom...
|
Homo sapiens | A 100 | 37 | — |
|
GEO · IPF Cell Atlas
|
Homo sapiens | A 100 | 36 | — |
|
GEO · HEPATIC TRANSCRIPTOME SIGNATURES IN PATIENTS WITH VARYING DE...
|
Homo sapiens | A 92 | 35 | — |
|
GEO · Histone Modifications by ChIP-seq from ENCODE/LICR
|
Mus musculus | insufficient | 35 | — |
|
GEO · An RNA-Seq transcriptome and splicing database of neurons, g...
|
Mus musculus | A 100 | 35 | — |
|
GEO · Single-cell RNA-seq reveals AML hierarchies relevant to dise...
|
Homo sapiens | F 19 | 34 | 2 1✓ |
|
GEO · Systems biological assessment of immunity to severe and mild...
|
Homo sapiens | A 99 | 34 | 1 1✓ |
|
GEO · Whole blood transciptome analysis in severe Covid-19 patien...
|
Homo sapiens | A 100 | 34 | — |
|
GEO · Next Generation Sequencing (RNAseq) of non-small cell lung c...
|
Homo sapiens | A 99 | 34 | — |
|
BioProject
|
— | F 47 | 34 | — |
|
ENA
|
— | F 33 | 33 | — |
|
GEO · Genome-wide maps of chromatin state in pluripotent and linea...
|
Mus musculus | insufficient | 33 | — |
|
GEO · Gene expression predicts histological severity and reveals d...
|
Homo sapiens | A 97 | 33 | — |
|
GEO · The transcriptional landscape of mouse blood stem/progenitor...
|
Mus musculus | F 32 | 33 | — |
|
BioProject
|
— | C 70 | 33 | — |
|
GEO · Tabula Muris: Transcriptomic characterization of 20 organs a...
|
Mus musculus | A 91 | 32 | — |
|
GEO · Adult mouse cortical cell taxonomy by single cell transcript...
|
Mus musculus | B 87 | 31 | 1 |
|
GEO · RNA-seq of 50 paired hepatocellular carcinoma
|
Homo sapiens | C 70 | 31 | — |
|
GEO · RNAseq Analysis of Formalin-Fixed Paraffin-Embedded Prostate...
|
Homo sapiens | B 83 | 30 | — |
|
BioProject
|
— | A 100 | 30 | — |
|
BioProject
|
— | A 95 | 29 | — |
|
GEO · Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke Unive...
|
Homo sapiens | insufficient | 28 | — |
|
GEO · Simultaneous profiling of transcriptome and chromatin access...
|
Homo sapiens; Mus musculus | insufficient | 27 | — |
|
GEO · Resolving the fibrotic niche of human liver cirrhosis using...
|
Homo sapiens; Mus musculus | D 60 | 27 | — |
|
BioProject
|
— | A 100 | 27 | — |
|
GEO · RNA-Seq profiling of 29 immune cell types and peripheral blo...
|
Homo sapiens | A 100 | 26 | — |
|
GEO · Comparison of Kidney Transcriptomic Profiles of Early and Ad...
|
Homo sapiens | A 100 | 26 | — |
|
GEO · CITE-seq: Large scale simultaneous measuremnt of epitopes an...
|
Homo sapiens | A 100 | 25 | 1 1✓ |
|
GEO · Robust prediction of response to immune checkpoint blockade...
|
Homo sapiens | D 69 | 25 | 1 1✓ |
|
GEO · Allelic reprogramming of the histone modification H3K4me3 in...
|
Danio rerio; Mus musculus | insufficient | 25 | — |
|
BioProject
|
— | B 80 | 25 | — |
|
GEO · Integrating microarray-based spatial transcriptomics and sin...
|
Homo sapiens | B 87 | 24 | 1 |
|
GEO · Core Ileal Transcriptome in Pediatric Crohn Disease
|
Homo sapiens | A 95 | 24 | — |
|
GEO · Massively parallel single-cell chromatin landscapes of human...
|
Homo sapiens; Mus musculus | insufficient | 23 | — |
|
GEO · Spectrum of Viral Load and Host Response Seen in Autopsies o...
|
Homo sapiens | A 99 | 23 | — |
|
GEO · Simple combinations of lineage-determining transcription fac...
|
Mus musculus | insufficient | 23 | 1 1✓ |
|
GEO · Pseudo-temporal ordering of individual cells reveals regulat...
|
Homo sapiens | A 99 | 23 | — |
|
GEO · Transcriptome analysis of psoriasis in a large case-control...
|
Homo sapiens | F 33 | 23 | — |
|
GEO · Single cell RNA-seq of primary human glioblastomas
|
Homo sapiens | A 96 | 23 | — |
|
GEO · Single cell transcriptome analysis of human pancreas reveals...
|
Homo sapiens | A 92 | 23 | — |
|
GEO · Whole transcriptome analysis identifies differentially regul...
|
Homo sapiens | D 68 | 23 | — |
|
GEO · Tabula Muris Senis: Bulk sequencing
|
Mus musculus | B 83 | 22 | — |
|
GEO · DNaseI Hypersensitivity by Digital DNaseI from ENCODE/Univer...
|
Homo sapiens | insufficient | 22 | — |
|
GEO · RNA-seq analysis of hepatocellular carcinoma with portal vei...
|
Homo sapiens | A 100 | 22 | — |
|
BioProject
|
— | B 85 | 22 | — |