Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
1,249 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · Deep RNA Sequencing Reveals Dynamic Regulation of Myocardial...
|
Homo sapiens | A 97 | 20 | — |
|
GEO · Comprehensive single cell RNAseq analysis of the kidney reve...
|
Mus musculus | B 83 | 19 | 1 |
|
GEO
|
— | A 100 | 19 | — |
|
GEO · Single-cell transcriptomics analysis of pancreatic primary t...
|
Homo sapiens | A 94 | 19 | — |
|
GEO · ATAC-seq data
|
Homo sapiens | insufficient | 18 | — |
|
GEO · Single cell analysis of smooth muscle cell phenotypic modula...
|
Homo sapiens | A 100 | 18 | 1 |
|
GEO · Single-cell RNA-seq reveals dynamic paracrine control of cel...
|
Mus musculus | A 90 | 18 | — |
|
GEO · Single-Cell Analysis of Sensory Experience Regulated Gene Ex...
|
Mus musculus | F 20 | 17 | — |
|
GEO · A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibi...
|
Mus musculus | insufficient | 17 | — |
|
GEO · Single-Cell Whole-Genome Bisulfite Sequencing for Analysis o...
|
Mus musculus | insufficient | 17 | — |
|
GEO · Gene expression profiling in Osteosarcomas
|
Homo sapiens | A 100 | 16 | — |
|
GEO · Understaning mechanisms underlying human gene expression var...
|
Homo sapiens | F 35 | 16 | — |
|
GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...
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Mus musculus | insufficient | 16 | 1 1✓ |
|
GEO · DNaseI Hypersensitivity by Digital DNaseI from ENCODE/Univer...
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Mus musculus | insufficient | 16 | — |
|
GEO · Targeted degradation of CTCF decouples local insulation of c...
|
Mus musculus | insufficient | 16 | — |
|
GEO · Single-Cell Transcriptome Analysis of Lineage Diversity and...
|
Homo sapiens | A 96 | 15 | 1 |
|
GEO · Comprehensive analysis of Transcriptome Profiles in Hepatoce...
|
Homo sapiens | A 100 | 15 | 1 |
|
GEO
|
— | A 97 | 15 | — |
|
GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...
|
Mus musculus | insufficient | 15 | 1 1✓ |
|
GEO · Evolutionary dynamics of gene and isoform regulation in mamm...
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Gallus gallus; Macaca mulatta; Bos taurus; Mus musculus; Rattus norvegicus | B 88 | 15 | 1 1✓ |
|
GEO · Dissecting cell composition and cell-cell interaction networ...
|
Homo sapiens | B 85 | 14 | — |
|
GEO · Patterns of Population Epigenomic Diversity in Arabidopsis t...
|
Arabidopsis thaliana | insufficient | 14 | — |
|
GEO · A developmental coordinate of the spectrum of pluripotency a...
|
Macaca fascicularis; Mus musculus | F 45 | 14 | — |
|
GEO
|
— | A 96 | 14 | — |
|
GEO · Systematic mapping of cell state trajectories, cell lineage,...
|
Danio rerio | B 83 | 13 | — |
|
GEO · Transcription profiles of rectal biopsies obtained during di...
|
Homo sapiens | A 100 | 13 | — |
|
GEO · Context specificity of the EMT transcriptional response
|
Homo sapiens | A 100 | 13 | 1 1⚑ |
|
GEO · DNA specificity determinants associate with distinct transcr...
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Homo sapiens | insufficient | 13 | — |
|
GEO · Single-cell RNA-seq reveals immune landscape of pancreatic c...
|
Homo sapiens | F 33 | 13 | — |
|
GEO · A comprehensive assessment of RNA-seq accuracy, reproducibil...
|
Homo sapiens; synthetic construct | A 100 | 13 | — |
|
GEO
|
— | C 78 | 13 | — |
|
GEO · Validation of noise models for single-cell transcriptomics
|
Mus musculus | D 60 | 13 | — |
|
GEO · Single-cell RNA sequencing of lung adenocarcinoma patient-de...
|
Homo sapiens | A 100 | 13 | — |
|
GEO · Unique Broad Histone Lysine 4 Methylation Domains in Mouse O...
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Homo sapiens; Mus musculus | insufficient | 13 | — |
|
GEO
|
— | A 100 | 13 | — |
|
GEO · Deciphering the cis-regulatory architecture of mammalian pho...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · A global network of transcription factors, involving E2A, EB...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...
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Homo sapiens | insufficient | 12 | 1 1✓ |
|
GEO · Cellular source and mechanisms of high transcriptome complex...
|
Mus musculus | F 33 | 12 | — |
|
GEO · RNA-seq of human fibroblasts during replicative senescence
|
Homo sapiens | A 100 | 12 | — |
|
GEO
|
— | A 100 | 12 | — |
|
GEO · Proteogenomic characterization of human early-onset gastric...
|
Homo sapiens | A 100 | 11 | 1 |
|
GEO · Genome-wide profiling of PPARγ:RXR and RNA polymerase II
|
Mus musculus | insufficient | 11 | — |
|
GEO · Transcriptome sequencing of Brassica oleracea tissues
|
Brassica oleracea | F 33 | 11 | — |
|
GEO · Resetting epigenetic memory by reprogramming of histone modi...
|
Mus musculus | insufficient | 11 | — |
|
GEO · 3D structures of individual mammalian genomes reveal princip...
|
Mus musculus | insufficient | 11 | 1 1✓ |
|
GEO · RNA-seq identifies circulating miR-125a-5p, miR-125b-5p and...
|
Homo sapiens | B 82 | 10 | — |
|
GEO · Identification of novel serum biomarkers in early-stage HCC...
|
Homo sapiens | A 93 | 10 | — |
|
GEO · RNA sequencing of bone marrow CD34+ hematopoietic stem and p...
|
Homo sapiens | A 99 | 10 | — |
|
GEO · Single-cell transcriptomics of the human retinal pigment epi...
|
Homo sapiens | F 33 | 10 | — |
|
GEO · RNA-seq from ENCODE/Caltech
|
Homo sapiens | B 82 | 10 | — |
|
GEO · High-throughput sequencing of matched colorectal normal, tum...
|
Homo sapiens | F 58 | 10 | 1 1✓ |
|
GEO · Genome-wide map of H3K4me3 in 12 day post-partum mouse sperm...
|
Mus musculus | insufficient | 10 | — |
|
GEO · MRI-localized biopsies reveal subtype-specific differences i...
|
Homo sapiens | A 99 | 10 | — |
|
GEO · Identification of in vivo DNA-binding mechanisms of Pax6 and...
|
Mus musculus | insufficient | 10 | — |
|
GEO · SLE lupus RNA-seq
|
Homo sapiens | A 97 | 10 | — |
|
GEO · Batch effects and the effective design of single-cell gene e...
|
Homo sapiens | F 52 | 10 | — |
|
GEO · Drop-Seq analysis of P17 FACS sorted retinal cells from the...
|
Mus musculus | D 68 | 10 | 1 1✓ |
|
GEO
|
— | insufficient | 10 | — |
|
GEO · Single-cell RNA-seq Uncovers Dynamic Processes and Critical...
|
Mus musculus | insufficient | 9 | — |